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Python Wrapper

Python Wrapper

  1. Clone the repository: 
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    git clone git@github.com:Medial-EarlySign/MR_Tools.git
  2. Edit AlgoMarker_python_API/run_server.sh and update the following:
  • AM_CONFIG: Path to the AlgoMarker configuration file.
  • AM_LIB: Path to the AlgoMarker shared library. Refer to AlgoMarker Library for compilation steps.
  • If using the old ColonFlag, follow the steps in the ColonFlag setup page to compile the ICU library. Add the ICU library path to LD_LIBRARY_PATH in the script before calling uvicorn. 3. Make sure you have all python dependencies installed (The AlgoMarker.py itself has no dependencies if you want to use it directly without FastAPI): 
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    python -m pip install fastapi
    4. Run the Server AlgoMarker_python_API/run_server.sh

For more details follow: Python AlgoMarker API Wrapper