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Medial EarlySign Documentation
GitHub
Home
Blog
Blog
A Journey into Explainable AI
Stop Blaming the Data: A Better Way to Handle Covariance Shift
Infrastructure Library
Infrastructure Library
MedModel JSON Format
00.InfraMed Library page
00.InfraMed Library page
Generic (Universal) Signal Vectors
MedDictionary
MedRepository
MedSignals / Unified Signals
PidDynamicRec
01.Rep Processors Practical Guide
01.Rep Processors Practical Guide
Cleaners Json Examples
Full Rep Processor
History Limit repo processor
How to print, how many outliers were
How to remove signal during admissions
How to rename signal
How to Write a RepProcessor
Noiser
Rep Calculator
Virtual Signals
How to create an empty signal
How to create an empty signal
Howto create a signal with constant value
02.Feature Generator Practical Guide
02.Feature Generator Practical Guide
BasicFeatGenerator
How to Write a Feature Generator
Unified Smoking
03.FeatureProcessor practical guide
03.FeatureProcessor practical guide
Charlson
Framingham Feature Processor
How to Write a Feature Processor
Embeddings
Embeddings
Embeddings WalkThrough Example
04.MedAlgo Library
04.MedAlgo Library
Feature Importance
Machine Learning Algorithms - Parameter Tuning (C++ Code)
but_why - feature contribs
MedPredictor practical guide
MedPredictor practical guide
How to Write a MedPredictor
MASK predictor - predict by_missing_value_subset
XGBoost added features
05.PostProcessors Practical Guide
05.PostProcessors Practical Guide
ButWhy Practical Guide
Explainers (But Why)
FairnessPostProcessor
How to Write a PostProcessor
MultipleImputations
AlgoMarkers
AlgoMarkers
AlgoMarker inspection
Request Json Format
Setup a new AlgoMarker
The new DllAPITester
DataRepository
DataRepository
Loading a New Repository
Medical vocabulary mappings
Repository Signals File Format
Repository Viewers
MedProcessTools Library
MedProcessTools Library
MedBootstrap
MedCohort
MedFeatures
MedLabels
MedPlot
MedSamples
SerializableObject
MedRegistry
MedRegistry
MedSamplingStrategy
TimeWindowInteraction
RepProcessor
RepProcessor
RepAggregationPeriod
RepBasicOutlierCleaner
RepBasicRangeCleaner
RepConfiguredOutlierCleaner
RepRulebasedOutlierCleaner
SampleFilter
SampleFilter
BasicSampleFilter
MatchingSampleFilter
Medial Tools
Medial Tools
Calibrate model, and calibration test
Compare AUC's
Fairness Extraction
FilterSamples
Iterative Feature Selector
Optimizer
Simulator
TestModelExternal
adjust_model
model_signals_importance
General
General
Doxygen
Howto Debug Program in Linux
Model Checklist
Model Checklist
AutoTest
AutoTest
Add a new AutoTest
Development kit
Development kit
Test 01: Train Samples Over Years
Test 02: Test Samples
Test 03: Cleaners
Test 04: Imputers
Test 05: But Why
Test 06: Bootstrap Results
Test 07: Feature Importance
Test_08 - calibration
Test 09: Coverage
Test 10: Matrix Features
Test 11: Matrix Over Years
Test 12: Fairness
Test 13: Model Explainability
Test 14: Noise Sensitivity Analysis
Test 15: Compare to Baseline Model
External Silent Run
External Silent Run
Test 01 - Generate Repository
Test 02 - Fit Model to Repository
Test 03 - Create Samples
Test 05 - Compare Repository with Reference Matrix
Test 06 - Compare Score Distribution
Test 07 - Calculate Score Kullback–Leibler Divergence (KLD)
Test 08 - Sex Ratio
Test 09 - Coverage Special Groups
Test 10 - Compare Important Feature
Test 11 - Estimate Performances
Test 12 - Lab Frequency
Test 13 - But Why (Shapley)
Test 14 - Model Explainability
Test 15 - Features and Flag
Test 16 - Sample Dates
Test 17 - Estimate Performance from Calibration
Test 18 - Analyze Messages
External validation after SR
External validation after SR
Test 01 - Load Outcome
Test 02 - Fit Model to Repository
Test 04 - Relabel & Create Samples
Test 05 - Compare Matrices & Feature Analysis
Test 06 - Matrix Feature Statistics & KLD Analysis
Test 07 - Bootstrap Analysis
Test 08 - Age of Flagged Analysis
Test 09 - Features With Missing Values Analysis
Test 10 - Calibration Test
Python
Python
Examples
Extending and Developing the Medial C++ API for Python
Python AlgoMarker API Server
Python Binding Troubleshooting
Using the Flow App
Using the Flow App
Fitting a MedModel to a Repository
Split Files
Using Flow to Prepare Samples and Calculate Incidences
Using Pre Processors
Bootstrap app
Bootstrap app
Bootstrap Result File: Column Legend
Utility Tools for Processing Bootstrap Results
Extending bootstrap
Extending bootstrap
Using Harrell C Statistics
Change model
Change model
Limiting Memory Usage in predict
Research
Research
Factorization Machines
Journal Club Page
Missing Values Based Uncertainty Analysis
Raindrop
Right Censoring
But Why Explainers
But Why Explainers
Experiments - Stage B
Experiments - Stage C (Freeze Version 1)
Sanity test experiment for debuging
ButWhy experiments results
ButWhy experiments results
TestGibbs
Conferences
Conferences
AIME 2019
Boston MLHC (ML in HealthCare) 2017
KDD 2017
What If
What If
An envelope script for Causal Inference on Synthetic Data
Checking Causal Inference on Synthetic Data
Generating Syntethic Data for Causal-Inference
Installation
Installation
AlgoMarker Library
MES Tools to Train and Test Models
Python API for MES Infrastructure
AlgoMarker Wrapper
AlgoMarker Wrapper
C++ Native Wrapper
Python Server Wrapper
Models
Models
AAA
Unplanned COPD Admission Prediction Model
LGI/Colon-Flag
FastProgressor
FluComplications
GastroFlag
LungFlag
Mortality Model
Pre2D
Tutorials
Tutorials
Complete Example: From Data to Model
01.ETL Tutorial
01.ETL Tutorial
ETL Process – Dynamic Testing of Signals
00.Setup
00.Setup
01.Data Fetching step
01.Data Fetching step
02.Process Pipeline
02.Process Pipeline
Categorical Signals & Custom Dictionaries
Unit conversion
Unit conversion
Full code example
Example config/output file of unit conversion
03.Finalize Load
03.Finalize Load
04.Read Results
04.Read Results
High level important paths
High level important paths
📁 CODE_DIR: Your ETL Workspace
📂 ETL_INFRA_DIR: A Closer Look
📁 WORK_DIR: The Output Directory
02.Access Data
02.Access Data
03.Create Samples
03.Create Samples
04.Train Model
04.Train Model
05.Apply Model
05.Apply Model
06.Model Evaluation
06.Model Evaluation
07.Deployment
07.Deployment
Home
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Research
Conferences
KDD 2017
Review of relevant papers in kdd 2017:
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