Python

Quick Start

We provide three libraries for use:

1. MedPython: A Python library that integrates with our C library.
2. ETL Library: A pure Python utility designed to assist in creating Data Repositories.
3. AlgoMarker API Server: A pure Python server wrapper for utilizing the AlgoMarker library (limited to predict/apply for implementation setting. Much lighter as opposed to MedPython).

Note: These libraries are not currently available as PyPi packages. To use them, you need to set the PYTHONPATH environment variable to their installation paths. For more information: Setup

Pages

• MedPython
  • Examples: Usage examples for MedPython.
  • Python Binding Troubleshooting: Guidance for troubleshooting Python bindings in MedPython.
  • Extend and Develop: Instructions for exposing additional C++ APIs to Python.
• ETL Library: Refer to the ETL Tutorial for more details.
• Python AlgoMarker API Server: Documentation for the pure Python FastAPI server of the AlgoMarker library.

Setup

Using PyPI

pip install medpython

Usage

import med
from AlgoMarker import AlgoMarker
from ETL_Infra import prepare_final_signals, prepare_dicts, finish_prepare_load, create_train_signal

More information on usage:

• ETL_Infra
• AlgoMarker
• med library

Compile Yourself

1. Clone the Git Repositories:
   • git clone medpython.git MR_LIBS
   • git clone MR_Tools.git
2. Set Up MedPython: Follow the instructions in Setup MedPython. The ETL Library and AlgoMarker API Server doesn't requires installation and are pure python code.
3. Configure Environment Variables: Ensure Python recognizes the libraries by setting the PYTHONPATH environment variable. Replace ${MR_LIBS} with the path to the cloned MR_LIBS repository and ${MR_TOOLS} with the path to the cloned MR_Tools repository.

export PYTHONPATH=${MR_LIBS}/Internal/MedPyExport/generate_binding/Release/medial-python312:${MR_TOOLS}/RepoLoadUtils/common

The Python AlgoMarker API Server does not require installation. Simply run the script directly when needed.