Inheritance diagram for UnifiedSmokingGenerator:

Public Member Functions
void	init_tables (MedDictionarySections &dict)

virtual int	init (map< string, string > &mapper)
	The parsed fields from init command.

virtual int	update (map< string, string > &mapper)
	Virtual to update object from parsed fields.

void	set_names ()

void	set_signal_ids (MedSignals &sigs)

void	fit_for_repository (MedPidRepository &rep)
	Prepartion and adjustment for model based on repository.

virtual void	copy (FeatureGenerator *generator)

int	_learn (MedPidRepository &rep, const MedSamples &samples, vector< RepProcessor * > processors)

void	calcSmokingDuration (int neverSmoker, int unknownSmoker, vector< RangeStatus > &smokeRanges, int birthDate, int lastPackYearsDate, UniversalSigVec &SmokingDurationUsv, int testDate, float &smokingDurationBeforeLastPackYears, float &smokingDuration)

void	getLastSmokingDuration (int birthDate, UniversalSigVec &SmokingDurationUsv, int testDate, int &lastDurationDate, float &lastDurationValue)

void	calcPackYears (UniversalSigVec &SmokingPackYearsUsv, int testDate, int &neverSmoker, int &currentSmoker, int &formerSmoker, int &lastPackYearsDate, float &lastPackYears, float &maxPackYears)

void	calcQuitTimeOriginalData (PidDynamicRec &rec, UniversalSigVec &smokingStatusUsv, UniversalSigVec &quitTimeUsv, int testDate, int formerSmoker, int neverSmoker, int currentSmoker, float &daysSinceQuittingOriginal)

void	calcPackYearsOriginalData (int testDate, int lastPackYearsDate, float lastPackYears, float &lastPackYearsOriginal, UniversalSigVec SmokingIntensityUsv, UniversalSigVec SmokingDurationUsv)

void	fixPackYearsSmokingIntensity (float smokingDurationSinceLastPackYears, float &smokingIntensity, float smokingDuration, float &lastPackYears, float &maxPackYears)

void	printDebug (vector< RangeStatus > &smokeRanges, int qa_print, UniversalSigVec &smokingStatusUsv, UniversalSigVec &SmokingIntensityUsv, int birthDate, int testDate, vector< pair< SMOKING_STATUS, int > > &smokingStatusVec, PidDynamicRec &rec, UniversalSigVec &quitTimeUsv, UniversalSigVec &SmokingPackYearsUsv, float smokingIntensity, float smokingDuration, float yearsSinceQuitting, float maxPackYears)

void	addDataToMat (vector< float * > &_p_data, int index, int i, int age, int currentSmoker, int formerSmoker, float daysSinceQuitting, float daysSinceQuittingOriginal, float maxPackYears, float lastPackYears, float lastPackYearsOriginal, int neverSmoker, int unknownSmoker, int passiveSmoker, float yearsSinceQuitting, float smokingIntensity, float smokingDuration)

int	_generate (PidDynamicRec &rec, MedFeatures &features, int index, int num, vector< float * > &_p_data)

void	get_p_data (MedFeatures &features, vector< float * > &_p_data)

int	calcNlst (int age, int unknownSmoker, int daysSinceQuitting, float lastPackYears)

SMOKING_STATUS	val2SmokingStatus (int sigVal, int smokingStatusSid, PidRec &rec)

void	genSmokingVec (PidDynamicRec &rec, UniversalSigVec &smokingStatusUsv, vector< pair< SMOKING_STATUS, int > > &smokingStatusVec, int testDate, int &unknownSmoker, int &neverSmoker, int &passiveSmoker, int &formerSmoker, int &currentSmoker)

void	genFirstLastSmokingDates (PidDynamicRec &rec, UniversalSigVec &smokingStatusUsv, UniversalSigVec &quitTimeUsv, int testDate, map< SMOKING_STATUS, pair< int, int > > &smokingStatusDates, vector< int > &dates, int birth_date)

void	genSmokingStatus (map< SMOKING_STATUS, pair< int, int > > &smokingStatusDates, vector< int > &dates, int testDate, int birthDate, vector< pair< SMOKING_STATUS, int > > &smokingStatusVec)

void	genSmokingRanges (vector< pair< SMOKING_STATUS, int > > &smokingStatusVec, int testDate, int birthDate, vector< RangeStatus > &smokeRanges)

void	genLastStatus (vector< RangeStatus > &smokeRanges, int &unknownSmoker, int &neverSmoker, int &formerSmoker, int &currentSmoker, int &passiveSmoker)

void	calcQuitTime (vector< RangeStatus > &smokeRange, int formerSmoker, int neverSmoker, int currentSmoker, int testDate, int birthDate, float &daysSinceQuitting, float &yearsSinceQuitting)

void	calcSmokingIntensity (UniversalSigVec &SmokingIntensityUsv, int testDate, int neverSmoker, float &smokingIntensity)

void	getQuitAge (PidDynamicRec &rec, int lastDate, float &ageAtEx, float &deltaTime)

void	get_required_signal_categories (unordered_map< string, vector< string > > &signal_categories_in_use) const
	returns for each used signal it's used categories

Public Member Functions inherited from FeatureGenerator
virtual void	prepare (MedFeatures &features, MedPidRepository &rep, MedSamples &samples)

void	get_p_data (MedFeatures &features)

virtual void	clear ()

void	get_required_signal_names (unordered_set< string > &signalNames)

virtual void	set_required_signal_ids (MedDictionarySections &dict)

void	get_required_signal_ids (unordered_set< int > &signalIds)

virtual void	get_generated_features (unordered_set< string > &names_list)

int	learn (MedPidRepository &rep, const MedSamples &samples, vector< RepProcessor * > processors)

int	learn (MedPidRepository &rep, const MedSamples &samples)

int	_generate (PidDynamicRec &in_rep, MedFeatures &features, int index, int num)

int	generate (PidDynamicRec &in_rep, MedFeatures &features, int index, int num)

int	generate (PidDynamicRec &in_rep, MedFeatures &features)

int	generate (MedPidRepository &rep, int id, MedFeatures &features)

int	generate (MedPidRepository &rep, int id, MedFeatures &features, int index, int num)

virtual int	_generate (MedFeatures &features)

int	generate (MedFeatures &features)

virtual int	init (void *generator_params)

virtual void	init_defaults ()

virtual int	nfeatures ()

virtual int	filter_features (unordered_set< string > &validFeatures)
	summary> prints summary of generator job.

virtual void	make_summary ()

void *	new_polymorphic (string derived_class_name)
	for polymorphic classes that want to be able to serialize/deserialize a pointer * to the derived class given its type one needs to implement this function to return a new to the derived class given its type (as in my_type)

size_t	get_generator_size ()

size_t	generator_serialize (unsigned char *blob)

virtual void	print ()

virtual void	dprint (const string &pref, int fg_flag)

Public Member Functions inherited from SerializableObject
virtual int	version () const
	Relevant for serializations.

virtual string	my_class_name () const
	For better handling of serializations it is highly recommended that each SerializableObject inheriting class will implement the next method.

virtual void	serialized_fields_name (vector< string > &field_names) const
	The names of the serialized fields.

virtual void	pre_serialization ()

virtual void	post_deserialization ()

virtual size_t	get_size ()
	Gets bytes sizes for serializations.

virtual size_t	serialize (unsigned char *blob)
	Serialiazing object to blob memory. return number ob bytes wrote to memory.

virtual size_t	deserialize (unsigned char *blob)
	Deserialiazing blob to object. returns number of bytes read.

size_t	serialize_vec (vector< unsigned char > &blob)

size_t	deserialize_vec (vector< unsigned char > &blob)

virtual size_t	serialize (vector< unsigned char > &blob)

virtual size_t	deserialize (vector< unsigned char > &blob)

virtual int	read_from_file (const string &fname)
	read and deserialize model

virtual int	write_to_file (const string &fname)
	serialize model and write to file

virtual int	read_from_file_unsafe (const string &fname)
	read and deserialize model without checking version number - unsafe read

int	init_from_string (string init_string)
	Init from string.

int	init_params_from_file (string init_file)

int	init_param_from_file (string file_str, string &param)

int	update_from_string (const string &init_string)

virtual string	object_json () const

Data Fields
float	nlstPackYears

float	nlstQuitTimeYears

float	nlstMinAge

float	nlstMaxAge

bool	nonDefaultNlstCriterion

bool	useDataComplition

FILE *	fp = stderr

string	debug_file = ""

set< vector< SMOKING_STATUS > >	possibleCombinations

float	timeSinceQuittingModelSlope = missing_val

float	timeSinceQuittingModelConst = missing_val

vector< string >	raw_feature_names

Data Fields inherited from FeatureGenerator
FeatureGeneratorTypes	generator_type = FTR_GEN_LAST
	Type.

vector< string >	names
	Feature name.

int	learn_nthreads = 16

int	pred_nthreads = 16

float	missing_val = (float)MED_MAT_MISSING_VALUE
	Missing value.

vector< string >	tags
	Tags - for defining labels or groups. may be used later for filtering for example.

int	iGenerateWeights = 0
	Feature/Weights generator.

vector< float * >	p_data

vector< string >	req_signals

vector< int >	req_signal_ids

int	serial_id

Additional Inherited Members
Static Public Member Functions inherited from FeatureGenerator
static FeatureGenerator *	make_generator (string name)

static FeatureGenerator *	make_generator (string name, string params)

static FeatureGenerator *	make_generator (FeatureGeneratorTypes type)

static FeatureGenerator *	make_generator (FeatureGeneratorTypes type, string params)

static FeatureGenerator *	create_generator (string &params)

Member Function Documentation

◆ _generate()

int UnifiedSmokingGenerator::_generate	(	PidDynamicRec &	rec,
		MedFeatures &	features,
		int	index,
		int	num,
		vector< float * > &	_p_data
	)

virtual

Reimplemented from FeatureGenerator.

◆ _learn()

int UnifiedSmokingGenerator::_learn	(	MedPidRepository &	rep,
		const MedSamples &	samples,
		vector< RepProcessor * >	processors
	)

virtual

Reimplemented from FeatureGenerator.

◆ copy()

virtual void UnifiedSmokingGenerator::copy ( FeatureGenerator * generator )

inlinevirtual

Reimplemented from FeatureGenerator.

◆ fit_for_repository()

void UnifiedSmokingGenerator::fit_for_repository ( MedPidRepository & rep )

virtual

Prepartion and adjustment for model based on repository.

Reimplemented from FeatureGenerator.

◆ get_p_data()

void UnifiedSmokingGenerator::get_p_data	(	MedFeatures &	features,
		vector< float * > &	_p_data
	)

virtual

Reimplemented from FeatureGenerator.

◆ get_required_signal_categories()

void UnifiedSmokingGenerator::get_required_signal_categories ( unordered_map< string, vector< string > > & signal_categories_in_use ) const

virtual

returns for each used signal it's used categories

Reimplemented from FeatureGenerator.

◆ init()

int UnifiedSmokingGenerator::init ( map< string, string > & mapper )

virtual

The parsed fields from init command.

[SmokingGenerator::init]

Reimplemented from FeatureGenerator.

◆ init_tables()

void UnifiedSmokingGenerator::init_tables ( MedDictionarySections & dict )

virtual

Reimplemented from FeatureGenerator.

◆ set_names()

void UnifiedSmokingGenerator::set_names ( )

virtual

Reimplemented from FeatureGenerator.

◆ set_signal_ids()

void UnifiedSmokingGenerator::set_signal_ids ( MedSignals & sigs )

virtual

Reimplemented from FeatureGenerator.

◆ update()

int UnifiedSmokingGenerator::update ( map< string, string > & map )

virtual

Virtual to update object from parsed fields.

Reimplemented from SerializableObject.

The documentation for this class was generated from the following files:

Internal/MedProcessTools/MedProcessTools/UnifiedSmokingGenerator.h
Internal/MedProcessTools/MedProcessTools/UnifiedSmokingGenerator.cpp

Public Member Functions

Data Fields

Additional Inherited Members

Member Function Documentation

◆ _generate()

◆ _learn()

◆ copy()

◆ fit_for_repository()

◆ get_p_data()

◆ get_required_signal_categories()

◆ init()

◆ init_tables()

◆ set_names()

◆ set_signal_ids()

◆ update()