DrugIntakeGenerator Class Reference

calculate drug coverage of prescription time in defined the time window. More...

#include <DrugIntakeGenerator.h>

Inheritance diagram for DrugIntakeGenerator:

Public Member Functions
int	init (map< string, string > &mapper)
	The parsed fields from init command.
void	init_defaults ()
void	set_names ()
virtual void	copy (FeatureGenerator *generator)
int	_learn (MedPidRepository &rep, const MedSamples &samples, vector< RepProcessor * > processors)
int	_generate (PidDynamicRec &rec, MedFeatures &features, int index, int num, vector< float * > &_p_data)
float	get_value (PidDynamicRec &rec, int idx, int time, int sig_outcomeTime)
void	set_signal_ids (MedSignals &sigs)
void	init_tables (MedDictionarySections &dict)
void	get_required_signal_categories (unordered_map< string, vector< string > > &signal_categories_in_use) const
	returns for each used signal it's used categories
Public Member Functions inherited from FeatureGenerator
virtual void	prepare (MedFeatures &features, MedPidRepository &rep, MedSamples &samples)
virtual void	get_p_data (MedFeatures &features, vector< float * > &_p_data)
void	get_p_data (MedFeatures &features)
virtual void	clear ()
void	get_required_signal_names (unordered_set< string > &signalNames)
virtual void	set_required_signal_ids (MedDictionarySections &dict)
void	get_required_signal_ids (unordered_set< int > &signalIds)
virtual void	get_generated_features (unordered_set< string > &names_list)
virtual void	fit_for_repository (MedPidRepository &rep)
	Prepartion and adjustment for model based on repository.
int	learn (MedPidRepository &rep, const MedSamples &samples, vector< RepProcessor * > processors)
int	learn (MedPidRepository &rep, const MedSamples &samples)
int	_generate (PidDynamicRec &in_rep, MedFeatures &features, int index, int num)
int	generate (PidDynamicRec &in_rep, MedFeatures &features, int index, int num)
int	generate (PidDynamicRec &in_rep, MedFeatures &features)
int	generate (MedPidRepository &rep, int id, MedFeatures &features)
int	generate (MedPidRepository &rep, int id, MedFeatures &features, int index, int num)
virtual int	_generate (MedFeatures &features)
int	generate (MedFeatures &features)
virtual int	init (void *generator_params)
virtual int	nfeatures ()
virtual int	filter_features (unordered_set< string > &validFeatures)
	summary> prints summary of generator job.
virtual void	make_summary ()
void *	new_polymorphic (string derived_class_name)
	for polymorphic classes that want to be able to serialize/deserialize a pointer * to the derived class given its type one needs to implement this function to return a new to the derived class given its type (as in my_type)
size_t	get_generator_size ()
size_t	generator_serialize (unsigned char *blob)
virtual void	print ()
virtual void	dprint (const string &pref, int fg_flag)
Public Member Functions inherited from SerializableObject
virtual int	version () const
	Relevant for serializations.
virtual string	my_class_name () const
	For better handling of serializations it is highly recommended that each SerializableObject inheriting class will implement the next method.
virtual void	serialized_fields_name (vector< string > &field_names) const
	The names of the serialized fields.
virtual void	pre_serialization ()
virtual void	post_deserialization ()
virtual size_t	get_size ()
	Gets bytes sizes for serializations.
virtual size_t	serialize (unsigned char *blob)
	Serialiazing object to blob memory. return number ob bytes wrote to memory.
virtual size_t	deserialize (unsigned char *blob)
	Deserialiazing blob to object. returns number of bytes read.
size_t	serialize_vec (vector< unsigned char > &blob)
size_t	deserialize_vec (vector< unsigned char > &blob)
virtual size_t	serialize (vector< unsigned char > &blob)
virtual size_t	deserialize (vector< unsigned char > &blob)
virtual int	read_from_file (const string &fname)
	read and deserialize model
virtual int	write_to_file (const string &fname)
	serialize model and write to file
virtual int	read_from_file_unsafe (const string &fname)
	read and deserialize model without checking version number - unsafe read
int	init_from_string (string init_string)
	Init from string.
int	init_params_from_file (string init_file)
int	init_param_from_file (string file_str, string &param)
int	update_from_string (const string &init_string)
virtual int	update (map< string, string > &map)
	Virtual to update object from parsed fields.
virtual string	object_json () const

Data Fields
string	signalName
int	signalId
int	win_from = 0
	time window for feature: from is the minimal time before prediciton time
int	win_to = 360000
	time window for feature: from is the maximal time before prediciton time
int	time_unit_win = MedTime::Undefined
	the time unit in which the windows are given. Default: Undefined
vector< string >	sets
	for FTR_CATEGORY_SET_* , the list of sets
int	time_unit_sig = MedTime::Undefined
	the time init in which the signal is given. (set correctly from Repository in learn and Generate)
string	in_set_name = ""
	set name (if not given - take list of members)
bool	bound_outcomeTime = false
string	timeRangeSignalName = ""
int	timeRangeSignalId
TimeRangeTypes	timeRangeType = TIME_RANGE_CURRENT
int	time_unit_range_sig = MedTime::Undefined
	the time unit in which the range signal is given. (set correctly from Repository in learn and _generate)
vector< unsigned char >	lut
	to be used when generating FTR_CATEGORY_SET_*
Data Fields inherited from FeatureGenerator
FeatureGeneratorTypes	generator_type = FTR_GEN_LAST
	Type.
vector< string >	names
	Feature name.
int	learn_nthreads = 16
int	pred_nthreads = 16
float	missing_val = (float)MED_MAT_MISSING_VALUE
	Missing value.
vector< string >	tags
	Tags - for defining labels or groups. may be used later for filtering for example.
int	iGenerateWeights = 0
	Feature/Weights generator.
vector< float * >	p_data
vector< string >	req_signals
vector< int >	req_signal_ids
int	serial_id

Additional Inherited Members
Static Public Member Functions inherited from FeatureGenerator
static FeatureGenerator *	make_generator (string name)
static FeatureGenerator *	make_generator (string name, string params)
static FeatureGenerator *	make_generator (FeatureGeneratorTypes type)
static FeatureGenerator *	make_generator (FeatureGeneratorTypes type, string params)
static FeatureGenerator *	create_generator (string &params)

Detailed Description

calculate drug coverage of prescription time in defined the time window.

a value between 0 to 1.

Member Function Documentation

_generate()

int DrugIntakeGenerator::_generate ( PidDynamicRec &  rec, MedFeatures &  features, int  index, int  num, vector< float * > &  _p_data  )

virtual

Reimplemented from FeatureGenerator.

_learn()

int DrugIntakeGenerator::_learn ( MedPidRepository &  rep, const MedSamples &  samples, vector< RepProcessor * >  processors  )

inlinevirtual

Reimplemented from FeatureGenerator.

copy()

virtual void DrugIntakeGenerator::copy ( FeatureGenerator *  generator )

inlinevirtual

Reimplemented from FeatureGenerator.

get_required_signal_categories()

void DrugIntakeGenerator::get_required_signal_categories ( unordered_map< string, vector< string > > &  signal_categories_in_use ) const

virtual

returns for each used signal it's used categories

Reimplemented from FeatureGenerator.

init()

int DrugIntakeGenerator::init ( map< string, string > &  mapper )

virtual

The parsed fields from init command.

        if (field == "win_from") win_from = med_stoi(entry.second);
        else if (field == "win_to") win_to = med_stoi(entry.second);
        else if (field == "signalName" || field == "signal") signalName = entry.second;
        else if (field == "time_unit") time_unit_win = med_time_converter.string_to_type(entry.second);
        else if (field == "sets") boost::split(sets, entry.second, boost::is_any_of(","));
        else if (field == "tags") boost::split(tags, entry.second, boost::is_any_of(","));
        else if (field == "in_set_name") in_set_name = entry.second;
        else if (field == "weights_generator") iGenerateWeights = med_stoi(entry.second);
        else if (field == "time_range_signal") timeRangeSignalName = entry.second;
        else if (field == "time_range_signal_type") timeRangeType = time_range_name_to_type(entry.second);
        else if (field == "bound_outcomeTime") bound_outcomeTime = stoi(entry.second) > 0;
        else if (field != "fg_type")
            MLOG("Unknown parameter \'%s\' for DrugIntakeGenerator\n", field.c_str());

[DrugIntakeGenerator::init]

[DrugIntakeGenerator::init]

Reimplemented from FeatureGenerator.

init_defaults()

void DrugIntakeGenerator::init_defaults ( )

virtual

Reimplemented from FeatureGenerator.

init_tables()

void DrugIntakeGenerator::init_tables ( MedDictionarySections &  dict )

virtual

Reimplemented from FeatureGenerator.

set_names()

void DrugIntakeGenerator::set_names ( )

virtual

Reimplemented from FeatureGenerator.

set_signal_ids()

void DrugIntakeGenerator::set_signal_ids ( MedSignals &  sigs )

inlinevirtual

Reimplemented from FeatureGenerator.

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The documentation for this class was generated from the following files:

• Internal/MedProcessTools/MedProcessTools/DrugIntakeGenerator.h
• Internal/MedProcessTools/MedProcessTools/DrugIntakeGenerator.cpp