calculate drug coverage of prescription time in defined the time window. More...

#include <DiabetesFinderGenerator.h>

Inheritance diagram for DiabetesFinderGenerator:

Public Member Functions
int	init (map< string, string > &mapper)
	The parsed fields from init command.

void	init_tables (MedDictionarySections &dict)

void	set_signal_ids (MedSignals &sigs)

void	init_defaults ()

void	set_names ()

virtual void	copy (FeatureGenerator *generator)

int	_generate (PidDynamicRec &rec, MedFeatures &features, int index, int num, vector< float * > &_p_data)

Public Member Functions inherited from FeatureGenerator
virtual void	prepare (MedFeatures &features, MedPidRepository &rep, MedSamples &samples)

virtual void	get_p_data (MedFeatures &features, vector< float * > &_p_data)

void	get_p_data (MedFeatures &features)

virtual void	clear ()

void	get_required_signal_names (unordered_set< string > &signalNames)

virtual void	set_required_signal_ids (MedDictionarySections &dict)

void	get_required_signal_ids (unordered_set< int > &signalIds)

virtual void	get_generated_features (unordered_set< string > &names_list)

virtual void	fit_for_repository (MedPidRepository &rep)
	Prepartion and adjustment for model based on repository.

virtual int	_learn (MedPidRepository &rep, const MedSamples &samples, vector< RepProcessor * > processors)

int	learn (MedPidRepository &rep, const MedSamples &samples, vector< RepProcessor * > processors)

int	learn (MedPidRepository &rep, const MedSamples &samples)

int	_generate (PidDynamicRec &in_rep, MedFeatures &features, int index, int num)

int	generate (PidDynamicRec &in_rep, MedFeatures &features, int index, int num)

int	generate (PidDynamicRec &in_rep, MedFeatures &features)

int	generate (MedPidRepository &rep, int id, MedFeatures &features)

int	generate (MedPidRepository &rep, int id, MedFeatures &features, int index, int num)

virtual int	_generate (MedFeatures &features)

int	generate (MedFeatures &features)

virtual int	init (void *generator_params)

virtual int	nfeatures ()

virtual void	get_required_signal_categories (unordered_map< string, vector< string > > &signal_categories_in_use) const
	returns for each used signal it's used categories

virtual int	filter_features (unordered_set< string > &validFeatures)
	summary> prints summary of generator job.

virtual void	make_summary ()

void *	new_polymorphic (string derived_class_name)
	for polymorphic classes that want to be able to serialize/deserialize a pointer * to the derived class given its type one needs to implement this function to return a new to the derived class given its type (as in my_type)

size_t	get_generator_size ()

size_t	generator_serialize (unsigned char *blob)

virtual void	print ()

virtual void	dprint (const string &pref, int fg_flag)

Public Member Functions inherited from SerializableObject
virtual int	version () const
	Relevant for serializations.

virtual string	my_class_name () const
	For better handling of serializations it is highly recommended that each SerializableObject inheriting class will implement the next method.

virtual void	serialized_fields_name (vector< string > &field_names) const
	The names of the serialized fields.

virtual void	pre_serialization ()

virtual void	post_deserialization ()

virtual size_t	get_size ()
	Gets bytes sizes for serializations.

virtual size_t	serialize (unsigned char *blob)
	Serialiazing object to blob memory. return number ob bytes wrote to memory.

virtual size_t	deserialize (unsigned char *blob)
	Deserialiazing blob to object. returns number of bytes read.

size_t	serialize_vec (vector< unsigned char > &blob)

size_t	deserialize_vec (vector< unsigned char > &blob)

virtual size_t	serialize (vector< unsigned char > &blob)

virtual size_t	deserialize (vector< unsigned char > &blob)

virtual int	read_from_file (const string &fname)
	read and deserialize model

virtual int	write_to_file (const string &fname)
	serialize model and write to file

virtual int	read_from_file_unsafe (const string &fname)
	read and deserialize model without checking version number - unsafe read

int	init_from_string (string init_string)
	Init from string.

int	init_params_from_file (string init_file)

int	init_param_from_file (string file_str, string &param)

int	update_from_string (const string &init_string)

virtual int	update (map< string, string > &map)
	Virtual to update object from parsed fields.

virtual string	object_json () const

Data Fields
bool	df_score_is_flag = true

bool	df_score_is_bitmask = false

vector< string >	df_drug_sets = { "ATC_A10_____" }

vector< string >	df_coded_sets

vector< string >	df_diagnosis_sets

string	df_diagnosis_sig = "RC"

string	df_coded_sig = "RC"

string	df_glucose_sig = "Glucose"

string	df_hba1c_sig = "HbA1C"

string	df_drug_sig = "Drug"

int	df_diagnoses_severity = 4

int	df_bio_mode = 0

int	df_output_verbosity = 2

int	df_output_non_dm_period = 0

int	df_past_event_days = (365)*3

float	df_by_single_glucose = 200.0f

float	df_by_single_hba1c = 7.0f

float	df_by_second_glucose = 126.0f

float	df_by_second_hba1c = 6.5f

float	df_pre_d_hba1c = 5.8f

float	df_pre_d_glucose = 101.0f

int	df_by_second_time_delta_days = (365) * 2

Data Fields inherited from FeatureGenerator
FeatureGeneratorTypes	generator_type = FTR_GEN_LAST
	Type.

vector< string >	names
	Feature name.

int	learn_nthreads = 16

int	pred_nthreads = 16

float	missing_val = (float)MED_MAT_MISSING_VALUE
	Missing value.

vector< string >	tags
	Tags - for defining labels or groups. may be used later for filtering for example.

int	iGenerateWeights = 0
	Feature/Weights generator.

vector< float * >	p_data

vector< string >	req_signals

vector< int >	req_signal_ids

int	serial_id

Additional Inherited Members
Static Public Member Functions inherited from FeatureGenerator
static FeatureGenerator *	make_generator (string name)

static FeatureGenerator *	make_generator (string name, string params)

static FeatureGenerator *	make_generator (FeatureGeneratorTypes type)

static FeatureGenerator *	make_generator (FeatureGeneratorTypes type, string params)

static FeatureGenerator *	create_generator (string &params)

Detailed Description

calculate drug coverage of prescription time in defined the time window.

a value between 0 to 1.

Member Function Documentation

◆ _generate()

int DiabetesFinderGenerator::_generate	(	PidDynamicRec &	rec,
		MedFeatures &	features,
		int	index,
		int	num,
		vector< float * > &	_p_data
	)

virtual

Reimplemented from FeatureGenerator.

◆ copy()

virtual void DiabetesFinderGenerator::copy ( FeatureGenerator * generator )

inlinevirtual

Reimplemented from FeatureGenerator.

◆ init()

int DiabetesFinderGenerator::init ( map< string, string > & mapper )

virtual

The parsed fields from init command.

Reimplemented from FeatureGenerator.

◆ init_defaults()

void DiabetesFinderGenerator::init_defaults ( )

virtual

Reimplemented from FeatureGenerator.

◆ init_tables()

void DiabetesFinderGenerator::init_tables ( MedDictionarySections & dict )

virtual

Reimplemented from FeatureGenerator.

◆ set_names()

void DiabetesFinderGenerator::set_names ( )

inlinevirtual

Reimplemented from FeatureGenerator.

◆ set_signal_ids()

void DiabetesFinderGenerator::set_signal_ids ( MedSignals & sigs )

virtual

Reimplemented from FeatureGenerator.

The documentation for this class was generated from the following files:

Internal/MedProcessTools/MedProcessTools/DiabetesFinderGenerator.h
Internal/MedProcessTools/MedProcessTools/DiabetesFinderGenerator.cpp

Public Member Functions

Data Fields

Additional Inherited Members

Detailed Description

Member Function Documentation

◆ _generate()

◆ copy()

◆ init()

◆ init_defaults()

◆ init_tables()

◆ set_names()

◆ set_signal_ids()