RepCreateBitSignal Class Reference

Inheritance diagram for RepCreateBitSignal:

Public Member Functions
int	init (map< string, string > &mapper)
void	get_min_jitters (string &jitters_s)
void	init_tables (MedDictionarySections &dict, MedSignals &sigs)
	Init required tables : Should be implemented for inheriting classes that have such tables.
void	register_virtual_section_name_id (MedDictionarySections &dict)
	Register section id to section name of new virtual signals.
void	set_required_signal_ids (MedDictionarySections &dict)
	Fill req_signal_ids : parent function just fills from req_signals.
void	set_affected_signal_ids (MedDictionarySections &dict)
	Fill aff_signal_ids : parent function just fills from aff_signals.
int	_apply (PidDynamicRec &rec, vector< int > &time_points, vector< vector< float > > &attributes_mat)
	apply processing on a single PidDynamicRec at a set of time-points : Should be implemented for all inheriting classes
void	get_required_signal_categories (unordered_map< string, vector< string > > &signal_categories_in_use) const
	returns for each used signal it's used categories
Public Member Functions inherited from RepProcessor
virtual void	clear ()
virtual int	init (void *params)
	initialize from a params object : Should be implemented for inheriting classes that have parameters
virtual void	init_defaults ()
	initialize to default values : Should be implemented for inheriting classes that have parameters
virtual void	set_signal (const string &_signalName)
	set signal-name : Should be implemented for inheriting classes that have signalName
virtual void	set_signal_ids (MedSignals &sigs)
	set signal-ids : Should be implemented for inheriting classes that have signalId
virtual void	get_required_signal_names (unordered_set< string > &signalNames)
	Append required signal names to set : parent function just uses req_signals.
virtual void	get_required_signal_names (unordered_set< string > &signalNames, unordered_set< string > preReqSignals)
	Append required signal names to set only if processor is actually required to produce any of preReqSignals : parent function just uses req_signals.
virtual void	add_virtual_signals (map< string, int > &_virtual_signals, map< string, string > &_virtual_signals_generic) const
	rep processors CREATING virtual signals need to implement this: adding their signals to the pile
virtual void	get_required_signal_ids (unordered_set< int > &signalIds)
	Append required signal names to set : parent function just uses req_signals.
virtual void	get_required_signal_ids (unordered_set< int > &signalIds, unordered_set< int > preReqSignals)
	Append required signal names to set only if processor is actually required to produce any of preReqSignals : parent function just uses req_signals.
bool	is_signal_affected (int signalId)
	Check if a signal is affected by processor </summray> Returns true if affected, false if not
bool	is_signal_affected (string &signalName)
virtual void	fit_for_repository (MedPidRepository &rep)
	make changes to RepProcessor according to available signals in Repository
virtual bool	filter (unordered_set< string > &reqSignals)
	Check if processor (and 'sub'-processors within) should be applied according to set of required signals </summray> Returns true if processor is not required and can be filtered, false otherwise
virtual void	init_attributes ()
	Init attributes information : Should be implemented for inheriting classes that have attributes.
virtual int	_learn (MedPidRepository &rep, MedSamples &samples, vector< RepProcessor * > &prev_processors)
	learn processing model on a subset of samples. Apply set of preceeding processors on DynamicPidRec before learning :
virtual int	_conditional_learn (MedPidRepository &rep, MedSamples &samples, vector< RepProcessor * > &prev_processors, unordered_set< int > &neededSignalIds)
	learn processing model on a subset of samples only if required. Apply set of preceeding processors on DynamicPidRec before learning :
int	learn (MedPidRepository &rep, MedSamples &samples, vector< RepProcessor * > &prev_processors)
	learn processing model on a subset of ids. Apply set of preceeding processors on DynamicPidRec before learning
int	learn (MedPidRepository &rep)
	learn on all pids in repository, using fake samples - works only for repProcessors that ignore sample dates
int	learn (MedPidRepository &rep, MedSamples &samples)
	learn on subset of samples without preceesing processors
virtual int	conditional_learn (MedPidRepository &rep, MedSamples &samples, vector< RepProcessor * > &prev_processors, unordered_set< int > &neededSignalIds)
	learn processing model on a subset of samples only if required. Apply set of preceeding processors on DynamicPidRec before learning :
int	conditional_learn (MedPidRepository &rep, MedSamples &samples, unordered_set< int > &neededSignalIds)
	learn processing model on a subset of ids only if required without preceesing processors
virtual int	_conditional_apply (PidDynamicRec &rec, vector< int > &time_points, unordered_set< int > &neededSignalIds, vector< vector< float > > &attributes_vals)
	apply processing on a single PidDynamicRec at a set of time-points only if required : May be implemented for inheriting classes
virtual int	_apply_simple (PidDynamicRec &rec, vector< int > &time_points)
int	apply (PidDynamicRec &rec, vector< int > &time_points, vector< vector< float > > &attributes_vals)
	apply processing on a single PidDynamicRec at a set of time-points
int	conditional_apply (PidDynamicRec &rec, vector< int > &time_points, unordered_set< int > &neededSignalIds, vector< vector< float > > &attributes_vals)
	apply processing on a single PidDynamicRec at a set of time-points only if required : if any of the signals in neededSignalIds is actually affected by processor
int	apply (PidDynamicRec &rec, MedIdSamples &samples)
	apply processing on a single PidDynamicRec at a set of time-points given by samples
int	conditional_apply (PidDynamicRec &rec, MedIdSamples &samples, unordered_set< int > &neededSignalIds)
	apply processing on a single PidDynamicRec at a set of time-points given by samples only if required
int	conditional_apply_without_attributes (PidDynamicRec &rec, const MedIdSamples &samples, unordered_set< int > &neededSignalIds)
	apply processing on a single PidDynamicRec at a set of time-points given by samples only if required, not affecting attributes
virtual void	dprint (const string &pref, int rp_flag)
	used for debug prints, each inheriting class can overload this one to get a more precise debug print.
virtual void	make_summary ()
void *	new_polymorphic (string derived_class_name)
	for polymorphic classes that want to be able to serialize/deserialize a pointer * to the derived class given its type one needs to implement this function to return a new to the derived class given its type (as in my_type)
size_t	get_processor_size ()
	get size of processor + processor_type
size_t	processor_serialize (unsigned char *blob)
	seialize processor + processor_type
virtual void	print ()
	optional printing of processor
Public Member Functions inherited from SerializableObject
virtual int	version () const
	Relevant for serializations.
virtual string	my_class_name () const
	For better handling of serializations it is highly recommended that each SerializableObject inheriting class will implement the next method.
virtual void	serialized_fields_name (vector< string > &field_names) const
	The names of the serialized fields.
virtual void	pre_serialization ()
virtual void	post_deserialization ()
virtual size_t	get_size ()
	Gets bytes sizes for serializations.
virtual size_t	serialize (unsigned char *blob)
	Serialiazing object to blob memory. return number ob bytes wrote to memory.
virtual size_t	deserialize (unsigned char *blob)
	Deserialiazing blob to object. returns number of bytes read.
size_t	serialize_vec (vector< unsigned char > &blob)
size_t	deserialize_vec (vector< unsigned char > &blob)
virtual size_t	serialize (vector< unsigned char > &blob)
virtual size_t	deserialize (vector< unsigned char > &blob)
virtual int	read_from_file (const string &fname)
	read and deserialize model
virtual int	write_to_file (const string &fname)
	serialize model and write to file
virtual int	read_from_file_unsafe (const string &fname)
	read and deserialize model without checking version number - unsafe read
int	init_from_string (string init_string)
	Init from string.
int	init_params_from_file (string init_file)
int	init_param_from_file (string file_str, string &param)
int	update_from_string (const string &init_string)
virtual int	update (map< string, string > &map)
	Virtual to update object from parsed fields.
virtual string	object_json () const

Data Fields
string	in_sig = ""
	the name of input categorial signal
string	out_virtual = ""
	the name of the output virtual signal
int	t_chan = 0
	time channel for categorial data
int	c_chan = 0
	channel for categorial data
int	duration_chan = 1
	if >=0 the channel of duration for the categorial signal
int	min_duration = 60
	minimal duration of a category
vector< int >	min_durations = {}
	option to state the min_duration for each category specifically
int	max_duration = 180
	maximal duration of a category
float	duration_add = 0
float	duration_mult = 0.1f
	will add to each duration (duration_add + duration_mult*duration)
int	dont_look_back = 7
	how many days back to not look at in in_sig. This is usefull in many cases
int	min_clip_time = 7
	minimal number of days to consider clipping after due to change to other drugs.
int	last_clip_period = 30
	after joining periods, we clip the last one to be exactly last_clip_period after the last appearance of the drug
vector< int >	min_jitters = { 0,0,0 }
	minimal length for allowed jitters : A-AB-B,ABC-AB-A,AB-A-AC
int	max_min_jitters
vector< string >	categories_names
	the names of the categories to create, categories_names[j] will sit at bit j (1 << j)
vector< vector< string > >	categories_sets
	the sets defining each category.
int	time_unit_sig = MedTime::Date
	time unit of the time channel in in_sig
int	time_unit_duration = MedTime::Days
	time unit of the duration (both in signal and in min_duration)
bool	change_at_prescription_mode = false
	change_at_prescription_mode = true - change signal at every prescription (only the relevant drugs). When false change only when prescription changes
MedDictionarySections *	_dict
string	print_dict = ""
int	time_channels = 1
vector< char >	all_cat_lut
vector< vector< char > >	categories_luts
ADD_SERIALIZATION_FUNCS(processor_type, in_sig, out_virtual, aff_signals, req_signals, t_chan, c_chan, duration_chan, min_duration, min_durations, max_duration, duration_add, duration_mult, dont_look_back, min_clip_time, last_clip_period, categories_names, categories_sets, time_unit_sig, time_unit_duration, change_at_prescription_mode, virtual_signals_generic, time_channels, min_jitters) private int	in_sid = -1
vector< string >	registry_values
Data Fields inherited from RepProcessor
RepProcessorTypes	processor_type = REP_PROCESS_LAST
	type of repository processor
unordered_set< string >	req_signals
	names of signals required for processsing
unordered_set< int >	req_signal_ids
	ids of signals required for processing
unordered_set< string >	aff_signals
	names of signals affected by processing
unordered_set< int >	aff_signal_ids
	ids of signals affected by processing
bool	unconditional = false
	indicated that processor should ALWAYS be applied
vector< string >	attributes
	attributes generated by the processor (optional)
vector< pair< string, int > >	virtual_signals
	virtual signals are created only in rep processors but can be used by any rep processor that comes after or any feture generator as a regular signal.
vector< pair< string, string > >	virtual_signals_generic

Additional Inherited Members
Static Public Member Functions inherited from RepProcessor
static RepProcessor *	make_processor (string name)
	create a new repository processor from name
static RepProcessor *	make_processor (string type, string params)
	create a new repository processor from name and a parameters string
static RepProcessor *	make_processor (RepProcessorTypes type)
	create a new repository processor from type
static RepProcessor *	make_processor (RepProcessorTypes type, string params)
	create a new repository processor from type and a parameters string
static RepProcessor *	create_processor (string &params)
	create a new repository processor from parameters string which contains rp_type

Member Function Documentation

_apply()

int RepCreateBitSignal::_apply ( PidDynamicRec &  rec, vector< int > &  time_points, vector< vector< float > > &  attributes_mat  )

virtual

apply processing on a single PidDynamicRec at a set of time-points : Should be implemented for all inheriting classes

Reimplemented from RepProcessor.

get_required_signal_categories()

void RepCreateBitSignal::get_required_signal_categories ( unordered_map< string, vector< string > > &  signal_categories_in_use ) const

virtual

returns for each used signal it's used categories

Reimplemented from RepProcessor.

init()

int RepCreateBitSignal::init ( map< string, string > &  mapper )

virtual

        if (field == "output_name")
            output_name = entry.second;
        else if (field == "signal")
            signalName = entry.second;
        else if (field == "unconditional")
            unconditional = med_stoi(entry.second) > 0;
        else if (field == "work_channel")
            work_channel = med_stoi(entry.second);
        else if (field == "start_time_channel")
            start_time_channel = med_stoi(entry.second);
        else if (field == "end_time_channel")
            end_time_channel = med_stoi(entry.second);
        else if (field == "time_window")
            time_window = med_stoi(entry.second);
        else if (field == "time_unit")
            time_unit = med_time_converter.string_to_type(entry.second);
        else if (field == "factor")
            factor = med_stof(entry.second);
        else if (field == "drop_missing_rate")
            drop_missing_rate = med_stof(entry.second);
        else if (field == "buffer_first")
            buffer_first = med_stoi(entry.second) > 0;
        else if (field == "output_signal_type")
            output_signal_type = entry.second;
        else if (field == "rp_type")
        {
        }
        else
            MTHROW_AND_ERR("Error in RepAggregateSignal::init - Unsupported param \"%s\"\n", field.c_str());

[RepAggregateSignal::init]

[RepCreateBitSignal::init]

Reimplemented from RepProcessor.

init_tables()

void RepCreateBitSignal::init_tables ( MedDictionarySections &  dict, MedSignals &  sigs  )

virtual

Init required tables : Should be implemented for inheriting classes that have such tables.

Reimplemented from RepProcessor.

register_virtual_section_name_id()

void RepCreateBitSignal::register_virtual_section_name_id ( MedDictionarySections &  dict )

virtual

Register section id to section name of new virtual signals.

Reimplemented from RepProcessor.

set_affected_signal_ids()

void RepCreateBitSignal::set_affected_signal_ids ( MedDictionarySections &  dict )

inlinevirtual

Fill aff_signal_ids : parent function just fills from aff_signals.

Reimplemented from RepProcessor.

set_required_signal_ids()

void RepCreateBitSignal::set_required_signal_ids ( MedDictionarySections &  dict )

inlinevirtual

Fill req_signal_ids : parent function just fills from req_signals.

Reimplemented from RepProcessor.

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The documentation for this class was generated from the following files:

• Internal/MedProcessTools/MedProcessTools/RepProcess.h
• Internal/MedProcessTools/MedProcessTools/RepProcess.cpp