Medial Code Documentation
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Public Member Functions | Data Fields
EmbeddingSig Class Reference
Inheritance diagram for EmbeddingSig:
SerializableObject

Public Member Functions

void clear_tables ()
 
int get_categ_orig (int val, vector< int > &codes) const
 
int get_categ_codes (int val, vector< int > &codes, int use_shrink=1) const
 
int get_categ_shrunk_codes (int val, vector< int > &codes) const
 
int get_continuous_orig (float val) const
 
int get_continuous_codes (float val, int use_shrink=1) const
 
int get_continuous_shrunk_codes (float val) const
 
int init (map< string, string > &_map)
 Virtual to init object from parsed fields.
 
int init_categorial (MedDictionarySections &dict, int &curr_code)
 
int init_categorial_tables (MedDictionarySections &dict)
 
int init_continous (int &curr_code)
 
int init_dummy ()
 
int add_sig_to_lines (UniversalSigVec &usv, int pid, int time, int use_shrink, map< int, map< int, float > > &out_lines) const
 
int get_codes (UniversalSigVec &usv, int pid, int time, int use_shrink, vector< int > &codes) const
 
int add_codes_to_line (vector< int > &codes, map< int, float > &out_line) const
 
int add_to_line (UniversalSigVec &usv, int pid, int time, int use_shrink, map< int, float > &out_line) const
 
int prep_model_batch (MedPidRepository &rep, MedSamples &samples)
 
EmbeddedCodeType type_name_to_code (string name)
 
string print_to_string (int verbosity)
 
int minimize ()
 
- Public Member Functions inherited from SerializableObject
virtual int version () const
 Relevant for serializations.
 
virtual string my_class_name () const
 For better handling of serializations it is highly recommended that each SerializableObject inheriting class will implement the next method.
 
virtual void serialized_fields_name (vector< string > &field_names) const
 The names of the serialized fields.
 
virtual void * new_polymorphic (string derived_name)
 for polymorphic classes that want to be able to serialize/deserialize a pointer * to the derived class given its type one needs to implement this function to return a new to the derived class given its type (as in my_type)
 
virtual void pre_serialization ()
 
virtual void post_deserialization ()
 
virtual size_t get_size ()
 Gets bytes sizes for serializations.
 
virtual size_t serialize (unsigned char *blob)
 Serialiazing object to blob memory. return number ob bytes wrote to memory.
 
virtual size_t deserialize (unsigned char *blob)
 Deserialiazing blob to object. returns number of bytes read.
 
size_t serialize_vec (vector< unsigned char > &blob)
 
size_t deserialize_vec (vector< unsigned char > &blob)
 
virtual size_t serialize (vector< unsigned char > &blob)
 
virtual size_t deserialize (vector< unsigned char > &blob)
 
virtual int read_from_file (const string &fname)
 read and deserialize model
 
virtual int write_to_file (const string &fname)
 serialize model and write to file
 
virtual int read_from_file_unsafe (const string &fname)
 read and deserialize model without checking version number - unsafe read
 
int init_from_string (string init_string)
 Init from string.
 
int init_params_from_file (string init_file)
 
int init_param_from_file (string file_str, string &param)
 
int update_from_string (const string &init_string)
 
virtual int update (map< string, string > &map)
 Virtual to update object from parsed fields.
 
virtual string object_json () const
 

Data Fields

string sig
 
EmbeddedCodeType type = ECTYPE_CATEGORIAL
 
int add_hierarchy = 1
 
int do_shrink = 1
 
int do_counts = 1
 
vector< string > categories_to_embed
 
string regex_filter = ""
 
vector< vector< float > > ranges
 
int time_chan = 0
 
int val_chan = 0
 
int win_from = 0
 
int win_to = 365
 
int sig_time_unit = global_default_time_unit
 
int win_time_unit = global_default_windows_time_unit
 
MedModelmodel = NULL
 
string model_file = ""
 
vector< string > model_req_sigs
 
vector< string > model_features_names
 
vector< float * > feat_ptrs
 
map< pair< int, int >, int > pidtime2idx
 
unordered_map< int, vector< int > > sig_members2sets
 
unordered_map< int, vector< int > > sig_members2sets_in_range
 
map< string, int > Name2Id
 
vector< int > categ_convert
 
map< int, int > Orig2Code
 
map< int, string > Orig2Name
 
map< int, int > Orig2ShrunkCode
 
int sid = -1
 

Member Function Documentation

◆ init()

int EmbeddingSig::init ( map< string, string > &  map)
virtual

Virtual to init object from parsed fields.

Reimplemented from SerializableObject.


The documentation for this class was generated from the following files: