Python

Quick Start

We provide three libraries for use:

1. MedPython: A Python library that integrates with our C library.
2. ETL Library: A pure Python utility designed to assist in creating Data Repositories.
3. AlgoMarker API Wrapper: A pure Python wrapper for utilizing the AlgoMarker library (limited to predict/apply for implementation setting. Much lighter as opposed to MedPython).

Note: These libraries are not currently available as PyPi packages. To use them, you need to set the PYTHONPATH environment variable to their installation paths. For more information: Setup

Pages

• MedPython
  • Examples: Usage examples for MedPython.
  • Python Binding Troubleshooting: Guidance for troubleshooting Python bindings in MedPython.
  • Extend and Develop: Instructions for exposing additional C++ APIs to Python.
• ETL Library: Refer to the ETL Tutorial for more details.
• Python AlgoMarker API Wrapper: Documentation for the pure Python wrapper of the AlgoMarker library.

Setup

1. Clone the Git Repositories:
   • MR_LIBS
   • MR_Tools
2. Set Up MedPython: Follow the instructions in Setup MedPython.
3. Configure Environment Variables: Ensure Python recognizes the libraries by setting the PYTHONPATH environment variable. Replace ${MR_LIBS} with the path to the cloned MR_LIBS repository and ${MR_TOOLS} with the path to the cloned MR_Tools repository.

export PYTHONPATH=${MR_LIBS}/Internal/MedPyExport/generate_binding/Release/medial-python312:${MR_TOOLS}/RepoLoadUtils/common

The Python AlgoMarker API Wrapper does not require installation. Simply run the script directly when needed.