IncidenceParams: Parameters for calculating incidence from repostory + cohort. More...
#include <MedCohort.h>
Inheritance diagram for IncidenceParams:
Public Member Functions | |
| int | init (map< string, string > &map) |
| Initialize from a map. | |
 Public Member Functions inherited from SerializableObject | |
| virtual int | version () const |
| Relevant for serializations. | |
| virtual string | my_class_name () const |
| For better handling of serializations it is highly recommended that each SerializableObject inheriting class will implement the next method. | |
| virtual void | serialized_fields_name (vector< string > &field_names) const |
| The names of the serialized fields. | |
| virtual void * | new_polymorphic (string derived_name) |
| for polymorphic classes that want to be able to serialize/deserialize a pointer * to the derived class given its type one needs to implement this function to return a new to the derived class given its type (as in my_type) | |
| virtual void | pre_serialization () |
| virtual void | post_deserialization () |
| virtual size_t | get_size () |
| Gets bytes sizes for serializations. | |
| virtual size_t | serialize (unsigned char *blob) |
| Serialiazing object to blob memory. return number ob bytes wrote to memory. | |
| virtual size_t | deserialize (unsigned char *blob) |
| Deserialiazing blob to object. returns number of bytes read. | |
| size_t | serialize_vec (vector< unsigned char > &blob) |
| size_t | deserialize_vec (vector< unsigned char > &blob) |
| virtual size_t | serialize (vector< unsigned char > &blob) |
| virtual size_t | deserialize (vector< unsigned char > &blob) |
| virtual int | read_from_file (const string &fname) |
| read and deserialize model | |
| virtual int | write_to_file (const string &fname) |
| serialize model and write to file | |
| virtual int | read_from_file_unsafe (const string &fname) |
| read and deserialize model without checking version number - unsafe read | |
| int | init_from_string (string init_string) |
| Init from string. | |
| int | init_params_from_file (string init_file) |
| int | init_param_from_file (string file_str, string ¶m) |
| int | update_from_string (const string &init_string) |
| virtual int | update (map< string, string > &map) |
| Virtual to update object from parsed fields. | |
| virtual string | object_json () const |
Data Fields | |
| int | from_year = 2007 |
| first year to consider in calculating incidence | |
| int | to_year = 2013 |
| last year to consider in calculating incidence | |
| int | start_date = 101 |
| int | from_age = 30 |
| the date in each year to start looking from (default is 0101), format is MMDD | |
| int | to_age = 90 |
| maximal age to consider | |
| int | age_bin = 5 |
| binning of ages | |
| int | incidence_years_window = 1 |
| how many years ahead do we consider an outcome? | |
| int | incidence_days_win = -1 |
| int | min_samples_in_bin = 20 |
| if -1: using incidence_years_window | |
| int | gender_mask = 0x3 |
| mask for gender specification (rightmost bit on for male, second for female) | |
| int | train_mask = 0x7 |
| mask for TRAIN-value specification (three rightmost bits for TRAIN = 1,2,3) | |
| string | rep_fname |
| Repository configration file. | |
Detailed Description
IncidenceParams: Parameters for calculating incidence from repostory + cohort.
Member Function Documentation
◆ init()
|
virtual |
Initialize from a map.
Reimplemented from SerializableObject.
Field Documentation
◆ from_age
| int IncidenceParams::from_age = 30 |
the date in each year to start looking from (default is 0101), format is MMDD
minimal age to consider
◆ min_samples_in_bin
| int IncidenceParams::min_samples_in_bin = 20 |
if -1: using incidence_years_window
minimal required samples to estimate incidence per bin
The documentation for this struct was generated from the following files:
- Internal/MedUtils/MedUtils/MedCohort.h
- Internal/MedUtils/MedUtils/MedCohort.cpp
