MedCohort - a vector of CohortRec's. More...

#include <MedCohort.h>

Inheritance diagram for MedCohort:

Public Member Functions
void	insert (int pid, int from, int to, int outcome_date, float outcome)
	Add a record.

int	read_from_file (string fname)
	Read to tab-delimited file.

int	write_to_file (string fname)
	Write from tab-delimited file.

int	read_from_bin_file (string fname)
	Read to binary file.

int	write_to_bin_file (string fname)
	Write from binary file.

void	get_pids (vector< int > &pids)
	Get all pids.

int	create_incidence_file (IncidenceParams &i_params, string out_file, const string &debug_file="")
	Generate an incidence file from cohort + incidence-params Check all patient-years within cohort that fit to IncidenceParams and count positive outcomes within i_params.incidence_years_window Outcome - incidence per age-bin - is written to file.

int	create_sampling_file (SamplingParams &s_params, string out_sample_file)
	Generate a samples file from cohort + sampling-params Generate samples within cohort times that fit SampleingParams criteria and windows.

int	create_samples (MedRepository &rep, SamplingParams &s_params, MedSamples &samples)

int	create_sampling_file_sticked (SamplingParams &s_params, string out_sample_file)
	Generate a samples file from cohort + sampling-params Generate samples within cohort times that fit SampleingParams criteria and windows.

int	create_samples_sticked (MedRepository &rep, SamplingParams &s_params, MedSamples &samples)

Data Fields
vector< CohortRec >	recs
	Cohort information.

Detailed Description

MedCohort - a vector of CohortRec's.

Member Function Documentation

◆ create_incidence_file()

int MedCohort::create_incidence_file	(	IncidenceParams &	i_params,
		string	out_file,
		const string &	debug_file = `""`
	)

Generate an incidence file from cohort + incidence-params
Check all patient-years within cohort that fit to IncidenceParams and count positive outcomes within i_params.incidence_years_window
Outcome - incidence per age-bin - is written to file.

Returns: -1 if writing to file failed, 0 upon success

◆ create_sampling_file()

int MedCohort::create_sampling_file	(	SamplingParams &	s_params,
		string	out_sample_file
	)

Generate a samples file from cohort + sampling-params
Generate samples within cohort times that fit SampleingParams criteria and windows.

Sample dates are selected randomly for each window of s_params.jump_days in the legal period, and written to file

Returns: 0 upon success. -1 upon failre to read repository

◆ create_sampling_file_sticked()

int MedCohort::create_sampling_file_sticked	(	SamplingParams &	s_params,
		string	out_sample_file
	)

Generate a samples file from cohort + sampling-params
Generate samples within cohort times that fit SampleingParams criteria and windows.

Sample dates are those with the required signals for each window of s_params.jump_days in the legal period (if existing), and written to file

Returns: 0 upon success. -1 upon failre to read repository

◆ read_from_bin_file()

int MedCohort::read_from_bin_file ( string fname )

inline

Read to binary file.

Returns: 1- if fail to open, 0 upon success

◆ read_from_file()

int MedCohort::read_from_file ( string fname )

Read to tab-delimited file.

Returns: 1- if fail to open, 0 upon success

◆ write_to_bin_file()

int MedCohort::write_to_bin_file ( string fname )

inline

Write from binary file.

Returns: 1- if fail to open, 0 upon success

◆ write_to_file()

int MedCohort::write_to_file ( string fname )

Write from tab-delimited file.

Returns: 1- if fail to open, 0 upon success

The documentation for this class was generated from the following files:

Internal/MedUtils/MedUtils/MedCohort.h
Internal/MedUtils/MedUtils/MedCohort.cpp

Public Member Functions

Data Fields