Welcome To Medial Libs Documentation

you can also use the search box to find your file/function

Internal Libs

InfraMed

• MedPidRepository - the main object to fetch data from our repositories. Most times we only use the the basic interface of MedRepository which this class inherited

MedAlgo

• MedPredictor - basic predictor interface. you may see all derived classes and models in the link.
  to see all options for json file please reffer to MedPredictorTypes

MedProcessTools

• MedModel - medial pipeline model for running all process. Pipeline objects:
  • RepProcessor - processing repository. to see all options for json file please reffer to RepProcessorTypes
  • FeatureGenerator - generating features from repository. to see all options for json file please reffer to FeatureGeneratorTypes
  • FeatureProcessor - processing features from already generated/processed features. to see all options for json file please reffer to FeatureProcessorTypes
  • PostProcessor - processing scores and attributes from samples. to see all options for json file please reffer to PostProcessorTypes
• MedSamples - an object that stores our samples - with patient id, prediction time, label and more..
• MedFeatures - an object that stores our matrix for all samples in MedSamples

MedStats

• MedBootstrapResult - the main object to run bootstrap on our data adn store the results, it contains the MedBootstrap as configuration for the bootstrap
• bootstrap.h - the internal bootstrap infrastracture for more general use

MedUtils

• MedMat - a more basic data structure to store matrix data
• MedPlot.h - A Library to plot graphs in HTML using plotly.js
• MedRegistry - A class that represents a registry records of from, to dates for each patient state
• MedSamplingStrategy - A class that samples on MedRegistry to create MedSamples
• MedCohort - A class that reperesents registry. should be merged with MedRegistry

MedTime

• MedTime.h - A library to convert between time units

Medial Helper Functions

• medial namespace

MedFeat

• MedOutcome - example object, need more documentation

Logger

• MedLogger - logging infra

Extrenal Libs

• LightGBM
  • Development Guide
  • Quick Start
  • Main Documentation page
  • Parameter Tuning
• XGBoost
  • Main Documentation page
  • Parameter Tuning
  • xgboost name space
• VowpalWabbit - Yahoo Research library for machine learning (mainly for texts), also kernel svm's and more..
  • vowpalwabitt name space
• Eigen
  • EigenSolver

General Comments

• TODO List
• This mainpage can be found in $MR_ROOT/Libs/InternalOrig/medial_utilities/medial_utilities/mainpage.md